NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116249_10432260

Scaffold Ga0116249_10432260


Overview

Basic Information
Taxon OID3300010357 Open in IMG/M
Scaffold IDGa0116249_10432260 Open in IMG/M
Source Dataset NameAD_USSTca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1212
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.84Long. (o)-87.68Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091169Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0116249_104322601F091169N/AKENTTITDYVKIPAKMTDRLHIIGVAETDIVLKDWSIRLIFNNNNIDYNYQIYRIYFFILLDIPKNKIFIDFNIPAKCLWYDPNFLNADKLKLLIYRNSVNSSGLVSFYLCWI*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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