Scaffold Ga0116249_10381342

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116249_10381342

Scaffold Ga0116249_10381342

Overview

Basic Information
Taxon OID	3300010357 Open in IMG/M
Scaffold ID	Ga0116249_10381342 Open in IMG/M
Source Dataset Name	AD_USSTca
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1299
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.84	Long. (^o)	-87.68	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080069	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116249_103813423	F080069	GAG	MKLHPLKRLAAIFGCTMVLAAAMPAFADDIAGDWLFDTSKFADNDCQISGRMTFTPTKVKNTYICLFVSEQICGKLNGNLYIKVQQSCTAQRIGKQVAIKTKVDKVLDRKPKIPYPEDWYLADNFIVQISNNKAEMNGEHYDEQRNLKARFWRDVELVG*

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