NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116237_10024215

Scaffold Ga0116237_10024215


Overview

Basic Information
Taxon OID3300010356 Open in IMG/M
Scaffold IDGa0116237_10024215 Open in IMG/M
Source Dataset NameAD_USDEca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7964
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.84Long. (o)-89.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023356Metagenome / Metatranscriptome210Y
F024321Metagenome / Metatranscriptome206N
F048287Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0116237_100242151F024321N/AAGLGAFTSMLINLLKVAGLVKDGQADKAFKIADLIVFVIVTVIYLTKTPVDWAQVDEWLVLLTALLGYVVSVFSGEFTHETIKGTPVIGYSYSEKKTKI*
Ga0116237_1002421512F023356AGGCGGMSTELKKSKAVSVRIEEPLFKAIEAQAELWKVKPAETIRRVLWFYFLPAALEMQLRGESEKFWKGELTPEAAGEYMVFTLEAVEKLRSSAMFLSREASRLREAMEGKLSEALEEEREGSET*
Ga0116237_1002421513F048287AGGAMYNKAVLLQTLQQVRLKVIDTLKLMLSEYEVSPESSLRVQPASYEVATGEKVEYPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGSRGVGAFLQFSVPKNYYGSNYFSVGEAGTRAALKKVENELVQNGVFTNLEEAELSRVDTFKNIEPEEPFSSYFSLFSLLKARKAHQRGYGTTFLVANSSQEFCVYDKLQEMREHGLETSELPETMRFEHRALKKEKVRSLYGFTRVNELFHGGYEVVKEKQVENWKNSLFSFSAEEVVVLGSKQLEQEMKAFQEKFGSNWFQYFLKSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELREKVCELE*
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