NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116242_10170030

Scaffold Ga0116242_10170030


Overview

Basic Information
Taxon OID3300010355 Open in IMG/M
Scaffold IDGa0116242_10170030 Open in IMG/M
Source Dataset NameAD_USDVca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2205
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)40.12Long. (o)-87.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048287Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0116242_101700304F048287GAGGMIDTLKLMLSDYEVSPESSVRVQPASYEVATGEKVEYPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGNRGVGAFLQFSVPKNYYGSNYFSVGEAGTRAALKKVEGELVQNGVFTNLEEAELSRIDTFKNIEPEEPFSSYFSLFSLLKARRAQQRGYGTTFLVANSSQEFCVYDKLQEMREHGLETSELPETMRFEHRALKKEKVRTLYGFTRVNELFHGGYEVVKEKQVESWKNSLFSFSAEEVVVLGSKQLEQEMKAFQEKFGSNWFQYFLKSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKREEGSSKTLGELYEELRGKVCELAGRN*
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