Scaffold Ga0116242_10090048

Overview

Basic Information

• Taxon OID: 3300010355
• Scaffold ID: Ga0116242_10090048
• Source Dataset Name: AD_USDVca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3329
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin035 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 40.12
  • Long. (^o): -87.63

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016798	Metagenome / Metatranscriptome	244	Y
F030054	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116242_100900482	F016798	N/A	MKNFLLILLLLFLVSCKKEFKQLQRSDVIYNFIALNDDLDYKLVYFCDKYNAFEHFYDVKNTILNEIGEYNYYKDMQSRMAVVSHTKDTGTCQFQNKTFYYLANKYKIKGANLNNENHQIAVMVQAFKDGKKNWWCGYKKYKKYENK*
Ga0116242_100900483	F030054	GAG	LIKIIMNKREKKLFFVILILLAVIMFMSNSFRKKNYTIDFNNNLINRYKNDIKSYNIKIDSLNAVLLAKKNIDTVIITKYKQKIDSVYAYNYSDYISFYDTLLHTNLLKTDTFICFDSINIQKLTTKIVKCERDSELLANCYVENNLYNNIIKNQDSVILLQDSINTTLQANCDKKLKKVKKQRNSAVGIAFTEFLVIIGLIAK*