Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10193636 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1851
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002421	Metagenome / Metatranscriptome	560	N
F002794	Metagenome / Metatranscriptome	529	Y
F010535	Metagenome / Metatranscriptome	302	Y
F066714	Metagenome / Metatranscriptome	126	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

560

Metagenome / Metatranscriptome

529

Metagenome / Metatranscriptome

302

Metagenome / Metatranscriptome

126

Protein ID	Family	RBS	Sequence
Ga0129333_101936362	F002421	AGGA	MANCTICKTTIAYPDIQGKTHFVCDGRVPARKQAPFIQGMLASQSSADARWTRPQQNEVDAAILHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGLIRNTGELAYAQRGGAHDHAQRLSVWAGI*
Ga0129333_101936363	F002794	GGAG	MSEGVAFNQGELSEETRKMVLDASANANHTMAVFGLLDEIMNVSRNPHASLIQRLRVMKNSLSLEDPMPLHDVTTLDLAIKALQAHS*
Ga0129333_101936365	F010535	AGGA	MTDPQIVDYSVYTGVMDNGQEILVQIFTSPESGKFLMGQIAFRTAASSWGVPIPLEKR*
Ga0129333_101936366	F066714	N/A	YRGSAQRPKANRKKALAFIDKVVANANELGVQMIIDYFPKEFGRAWRCDRQAWSKYSKPTVSGAPGGDWFHVEIDPIKADSVIAVKAAFLKVFGEIPPKP*

Protein ID

Family

RBS

Sequence

Ga0129333_101936362

AGGA

MANCTICKTTIAYPDIQGKTHFVCDGRVPARKQAPFIQGMLASQSSADARWTRPQQNEVDAAILHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGLIRNTGELAYAQRGGAHDHAQRLSVWAGI*

Ga0129333_101936363

GGAG

MSEGVAFNQGELSEETRKMVLDASANANHTMAVFGLLDEIMNVSRNPHASLIQRLRVMKNSLSLEDPMPLHDVTTLDLAIKALQAHS*

Ga0129333_101936365

AGGA

MTDPQIVDYSVYTGVMDNGQEILVQIFTSPESGKFLMGQIAFRTAASSWGVPIPLEKR*

Ga0129333_101936366

N/A

YRGSAQRPKANRKKALAFIDKVVANANELGVQMIIDYFPKEFGRAWRCDRQAWSKYSKPTVSGAPGGDWFHVEIDPIKADSVIAVKAAFLKVFGEIPPKP*

NMPFamsDB