Scaffold Ga0129333_10107037

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10107037
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2582
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Rhodonellum → Rhodonellum psychrophilum → Rhodonellum psychrophilum GCM71 = DSM 17998 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010758	Metagenome / Metatranscriptome	299	N
F014844	Metagenome / Metatranscriptome	259	Y
F076011	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_101070371	F076011	N/A	MKLFRKRNPETPETPKLPIMKAATLALLRHLLTFIGGA
Ga0129333_101070374	F014844	N/A	MLIGYGYGYPLSTLQGGGLSASAWAAFNTRADADGASTAEAAVSGCLFGRFATIYNF*
Ga0129333_101070376	F010758	N/A	PLVFADVQSATTDSGSLSLVVGVYFSDRVESIASMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTSVSLTRFVESRDDRTAGWQATLVFQIPYSHSVCEIPS*