Scaffold Ga0129333_10093680

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10093680
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2776
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. B2-3-10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F006182	Metagenome	379	Y
F093841	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100936802	F006182	GAGG	LKINFRVNGTMEVPDDAIKHYDVAGELYALEFNDIMYMLQVCIVAEAGAGGFDILHQFEEMDNHNIKNLHYDDVNFIEE*
Ga0129333_100936805	F002406	GAG	MEDLKWISAMSERLRDTLSSEYDDETKDLIIRAFMNGLFKNPGLVEDLKSSSLIESDYFEDED*
Ga0129333_100936806	F093841	GAG	MKIEKFIYMSGGFYVYKMEDGYAVKDQFGYTLKTAKTVKTCDRYVQQQLQTRRVAERYAIEKINQDHDKNRAS*
Ga0129333_100936807	F002398	AGG	MLPLLHVFLLTSVDPIKKFVSLNTYISQNAKIYCHQYDIDPLMANIVCFNIIEKKSVDFFAYLDTIGVEHTQVGGYFFFRKKPNNE*