Scaffold Ga0129333_10063179

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10063179
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3449
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F005478	Metagenome / Metatranscriptome	399	Y
F021760	Metagenome / Metatranscriptome	217	Y
F029725	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1006317911	F005478	N/A	MYDDYDLDYSFANDYNLDEDSYYEYGTSDLDEDYARDTQDYDALAYRHYA*
Ga0129333_100631794	F029725	N/A	MTVNPLFEFLYEKCREDPDLLATIIDEYLTALSESKLTELEDFLSNNFGDN*
Ga0129333_100631797	F001968	GAGG	MFDEMWQEIQDMPGEIFDMDIPELRDTEKFDVNEYLNANYDY*
Ga0129333_100631799	F021760	N/A	MCGPAFEYTREDFFNDASQQEWDEWEQKAAELELPLDYYLAEFV*