Scaffold Ga0129333_10062611

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10062611
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3466
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F005531	Metagenome / Metatranscriptome	397	Y
F014129	Metagenome / Metatranscriptome	265	Y
F070095	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1006261111	F005531	AGG	MKITYSIWQGANLLSVDNTANNADELLEVMKDLNKLGKGFTYNVRKVEVNN*
Ga0129333_100626114	F000447	AGG	MGYIEIFRLDENGAGWVDLSEATPEEMLDLEIGLFQEGVL*
Ga0129333_100626118	F014129	AGG	MNTLKYEIREITLENVTADEANQIVCVFCDDYASNIFCGNCNEYKGLMTLGEWLSYTNESWLS*
Ga0129333_100626119	F070095	GGAGG	MEFYLDLDYLSFYVDNLYPNGIAIEIPTWVIVGTISLIYSIRLLKKDK*