NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129333_10030157

Scaffold Ga0129333_10030157


Overview

Basic Information
Taxon OID3300010354 Open in IMG/M
Scaffold IDGa0129333_10030157 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5124
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004837Metagenome / Metatranscriptome421Y
F012449Metagenome / Metatranscriptome280Y
F046337Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0129333_1003015710F004837N/AMTQAEYLLAQKHRHYWEQYQAALFMRLSPEAVGDLQAILVAHGRPNTNWWCADCVKSALSYIYEQADQFA
Ga0129333_100301576F046337N/AMTWTRLTKYTMPIPMEEVFLALEDGNYAVGWLTEGQITFTNIHGEAWWTHEVSAWMYPKKP*
Ga0129333_100301579F012449N/ALTALAIAEYHVLPQAWYRTWMGRHKPFSCVTCLTFWTGFVLTLLTCDWTLAPVYGLASAGLTVVILQVTNR*

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