Scaffold Ga0129333_10024652

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10024652
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5697
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F002867	Metagenome / Metatranscriptome	524	Y
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F007971	Metagenome / Metatranscriptome	341	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1002465214	F004722	AGG	MVMEWLMREIRLAKTSDLHRMAAFLEFARQVRKGSRQQRTEARLAQSNSWRKDVDEDVRWRV*
Ga0129333_100246523	F007971	GGAGG	MAVKSKTALGRLEHKAGRPKTTRQGYGQHSRPHRRGKKKLVGQGR*
Ga0129333_100246524	F002317	AGCAG	MDNHEEVYSAAPEHPNPFNQAVPALLTAAVIGLGGLFMQVAKLDQSVSTVAADIQELKNDSKERLSDLENRVRHIEMTVGTAK*
Ga0129333_100246525	F002867	AGG	MSVLNTTDFGNGYSLDQLENERGELYYRACKDSICRYAEDHYIAMMYLEGMGWDSKADLQ
Ga0129333_100246529	F003805	N/A	MRPIEHSPESSFHKAVTDKWLVDLFNRQDYRGLLEAALVLNTLQQLERTKSAWAIREAADNLADQFGMDRDSA*