Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10020327 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10020327 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6310
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (31.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6310

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (31.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F017987	Metagenome	237	Y
F073444	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1002032710	F073444	N/A	MNCHQHAVKDFDLQIEMNDLEMEMLRDHGEILPYNEGRVDELEQKKLKLLLGKRFHQNATNAYWYYLAKAGK*
Ga0129333_1002032713	F008128	GAG	MQTVPVPKLTLSFAVDIEVEYNSFGGKTENEIAEALQDDLDDLLYELSPYVKNVYTSCTSVAFND*
Ga0129333_100203275	F017987	GAG	VAWWYAPPVDHSSDGRFVLLYTNSGAQAPLAHWRTYKPKEIFTQHDAWDLFFNMMDAGYVPFPGTALPQLKSALKKQ*
Ga0129333_100203277	F002738	GGA	MSIDTYGLPSEQYVKFFKDNVRFAARLYLDTCNILSAEGVGNVDFKTVSNIYQETVYATNDDCRRYQKANNPDALKDDDLYSMLTPSREELMNEIKSVNAKVEALTDYLAELVKVTTNGLEGIAENLVD*
Ga0129333_100203278	F013517	N/A	MFESLFAAVIPVMKDLLWAAAGMLLTYLINKVQSQFS*
Ga0129333_100203279	F001018	N/A	MSQITQTKLNKLNVFELYKHYAALEQSLPLLTPESQDLAKSELETCANLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKNLLGWLRRSLPFDTNKITGKNYQFTLVKKKELTVEVSTDPEFWSSQERELYCIEEEVSTTKRVVLRSMSGEVLSDRTEPSIKTKVLPNLDAIRSAYQNGQQLPSGIKVTQEYSVRSKRIYLEPRVELEASEYPGELLPED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10020327

Overview

Ecosystem & Geography

Associated Families

Sequences