Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10016466 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10016466 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7028
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (73.68%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7028

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (73.68%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002546	Metagenome / Metatranscriptome	549	Y
F003582	Metagenome / Metatranscriptome	478	Y
F010248	Metagenome / Metatranscriptome	306	Y
F011938	Metagenome / Metatranscriptome	285	Y
F013878	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1001646611	F000671	AGGA	MEKILCYSCNKTKHKLDVKKSSLLPINLFICESCQASKFEPRWVIILAGRSSGPDYVKEFIIRRRYVGNEISASELLV*
Ga0129333_1001646612	F011938	AGGGGG	VKEYYDTILVVYIHEEQCHGTVENMGAFASLVKYNKDGLEYEELFENEEFTVLNEIVFKHIEEQE*
Ga0129333_1001646613	F000473	GAGG	MSTSPYSDNNHFKHGINLWTGEPNKPVFYTEEMKKKVWEIKKPSLLLMDIVKYPDFLALRLYEDNFLQFEGTKKEIVIDYVSKVKKLIESYGVRCELEGVPSERVL*
Ga0129333_1001646615	F013878	AGG	MLNLTERGVEIFINKAKNIQPFWHNYDLIIWRKDSSGFTNTNGMFKDNSWGIAEVVSVDSNGIWKLPKKYVRHFK*
Ga0129333_1001646617	F003582	N/A	MNTYSVKLEVSAEVQAFSEEDAADYINDIFGIDDEVKSIKLIAIKEK*
Ga0129333_1001646619	F002546	N/A	DKMFFNVLGSVATFITGTLAGLLIGQSGAKDIMKAQLDNKEMDAKNTQADKKLESELEIAEKKVDAELDAVRARLAAKPDGAMPAEQPVDAEWDKE*
Ga0129333_100164667	F010248	GGA	MRKSDRIRLLEMEIIRLQFQLEYLNTAVKLLLEESSVKAPEMDAGKWYTSKLDEITKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10016466

Overview

Ecosystem & Geography

Associated Families

Sequences