Scaffold Ga0129333_10013176

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10013176
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7842
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F028717	Metagenome / Metatranscriptome	190	Y
F058142	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100131763	F003807	GAGG	MNNDNVWLHSDIDKIKSLIADEAKALPILNNLEASIKQLKAKQQFRLALLNQLLESIKDQE*
Ga0129333_100131765	F058142	AGGAG	MALVDVEVLNQPLVNGTEIYNVLKRDIPSRYNIPIYQDFPSDSEIVRYGVYVSDVHQNERTVNQLGVQYCSAIYNATDVFQITYISYQDDPYNTQVNNIIANLVTSIKDDGQQLFDGYFERTFSQERTYGPTQAEKHTWTFSLVRLEFNT*
Ga0129333_100131766	F002260	AGGA	MSVPYQRISNATVQDIAFYDPAAERRAEALNVDWDPYFKVASQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSQLIKNDQTLIRLDTFGAVLVFYESLVTDVSNMNDVDRQNYDFAKERCDREWTKALELMNFYDLYQDSPQGPTTKLEENWSADVDYFNGDRRYF*
Ga0129333_100131767	F011761	AGGAG	MAYVLGGANNEADGFTTAISNFALRAMHESNGLVNLTNVVTPTQGNEFLVPNFAPITYQDYNPNGTGGTYTGNAVVQNPALGQGSITATPAVAQTAFDIFYGWTTSFQLAATLGAELGESFAEKVDQRVCAAFTSFKATAGNTNYSPVPADGFARPLELGAMELIPDGATPTTATAGFTSNSVVEMVRNIKQNFKVARMPGSPVIVIDSNGDDGVIGSTLNRLLSELTGGAVSQTGGSNLSALGNELLTTGRIENIYGCMVMATTFLASATRTVAGDAGTSVLVGAYFGDSALFTVMKEGLQLKQGEVPGGLQMWLTGVGYFGSGVGDLRRGGAINIVQG*
Ga0129333_100131768	F028717	AGGA	MDSTNNFVGNDSAPGVAQGQVTDNSNEQNVNPGAIRKSTTQGILSALSNASGVQFQSVEDALAFMARVGAQTTSGGSAQPAMEPKVQQQPGRVTTNDLHEQFQRLQQDLHSKEQKLREKELDADIQRAMGDRFDQDLMDYALGKVKSNIQWNDDGTYAIVNSKGQERYGSDGNPLSIQGLVQEVAQGNPKLLKQSNLNSGSGLRPGQGQFTGATDEAIPDYSRDPAAFNAWAARNGLGKNIGLKGLGVTATVQNSSRKIL*
Ga0129333_100131769	F026558	AGGA	MKNKDLLKRSPIYDNIYLQMLSYQWAYLGGLPFKMSVRKKRPSEDSTLYNDLVNNTIAQPICRYIVDTINDVLFEPGVKRNVQFCTPQGTYIDPKNTDWADLFLLDADLNNRSLTSFMEGIGDLTSIYGHCWVAVDMPQASEGNLGRPYVCAINPLDVWDWEWDWYGGRPLLKYVKIKEMEEEDSYYIKCYHLGDAMTPSYWRSYEVPKSVNGSESLNADAELIGEGIFPPGMSLPVFIAYGRRDPRTIDFGVSDIDSATDAQKEHYKLECEKYTALQFAHTIIRAEKGISIPVHAGAIVRASEGQVEAIPVDTGDVDKIITAQQDILEQIEALTGLGGLRNTKNQIASGIAIIEERKQLHRLAKAKARLMEVAEEMIFTYAARFMNMRWAGEVHYNTDYEAHDTNYRLALIKSAKELVGDNEIIQSLITKEIIGMLAPAESIPEYENAYIQTLPTGELKTLMTEENTQINSRDLGESMIPTHEMYGEEEEQVYDNGDGVAEGGDNTSILGGAGTPITNVGMSYYPAQVPPLILNTMNTGR*