Basic Information | |
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Taxon OID | 3300010354 Open in IMG/M |
Scaffold ID | Ga0129333_10009741 Open in IMG/M |
Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9072 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (69.57%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 39.2637 | Long. (o) | -76.0017 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001507 | Metagenome / Metatranscriptome | 681 | Y |
F005745 | Metagenome / Metatranscriptome | 391 | Y |
F034902 | Metagenome / Metatranscriptome | 173 | Y |
F039103 | Metagenome / Metatranscriptome | 164 | Y |
F049499 | Metagenome | 146 | Y |
F050227 | Metagenome / Metatranscriptome | 145 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0129333_1000974111 | F050227 | GGTGG | MQFEAGNVNEIESYDNKCRDCDSNNTMEYCENDCGEICNECHYMGEADLECVAECDTHKVYLTEEFVPEYRLEKA* |
Ga0129333_1000974113 | F001507 | N/A | MTTTYKPYTIDELVTEIYEDNLSHFEFMENMNGGDCDCDLHHTMQVILRYWE* |
Ga0129333_1000974116 | F034902 | AGGA | MLSTALAIQEATRDAVHDEEVMGMASAIFHHRHELDEEDFIKAMYMYSAHLSAMTATLVAHACLTESQINDMLETINEMENMGKDITNGN* |
Ga0129333_1000974122 | F049499 | GAGG | MSATMINMDYRLVDILNANQLEVDDLIGIGDEVVKIISIKEIFSGFHATIENEFGEKEEIEIGDDERFELFIWD* |
Ga0129333_1000974123 | F039103 | N/A | SDLLEAVNAWDKCVDFGEAKEYATYNLSDPTGKMYTKTFYRNGEVSIR* |
Ga0129333_100097419 | F005745 | AGGA | MEILATTLDDRLQKLVNLKVEGVDIMHGELKIKMLEAEAELQMAQEIEEENDYSDAMESMERKYWEGYTDALANLYSLTYDLSFAIAAREAENA* |
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