Scaffold Ga0129333_10009562

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10009562
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9162
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009329	Metagenome / Metatranscriptome	319	Y
F010681	Metagenome / Metatranscriptome	300	Y
F048809	Metagenome / Metatranscriptome	147	Y
F090331	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000956222	F048809	GGA	MIKKFIRWFVSPNEKPNTEDVYSKLIELQERIEVLESESVENSNCFYELSNSIDAVDARIDILTLENWCKKDV*
Ga0129333_1000956223	F010681	N/A	MRLNPNQQFWANIFRCAVERSNIYFQDKDLERHAREHTTVVLALQKGEEFWKELL*
Ga0129333_100095624	F009329	AGGAG	MTPYELRFEIFKQAYNMLNDEFCVKYDTAREWNNKVDNLELEYPDFPSLEKVLEQAEIINNFVSSK*
Ga0129333_100095628	F090331	AGCAG	MSIAVALAIYTSLIAFVSSIMVYYYKMMYPREEAKLMEKSK*