Basic Information | |
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Taxon OID | 3300010354 Open in IMG/M |
Scaffold ID | Ga0129333_10007589 Open in IMG/M |
Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10231 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (58.82%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 39.2637 | Long. (o) | -76.0017 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001841 | Metagenome / Metatranscriptome | 627 | Y |
F009141 | Metagenome / Metatranscriptome | 322 | Y |
F014614 | Metagenome / Metatranscriptome | 261 | Y |
F022190 | Metagenome / Metatranscriptome | 215 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0129333_1000758910 | F022190 | AGGAGG | VKVLDIEELRFEGDHLVVDALVDDAVLVYPQTQLDPPEWGPALCRGTLYFSDEDLIPATDAQLRAMLTERVDDWAPLDTSDWNV* |
Ga0129333_1000758912 | F001841 | GAGG | MIPTMFERPNLLLGLMRVAAWLFWRDPVAKPEPPQPKRPRKPILGYTIGDIPYELLAVIRVSWYRKGMAYEVEEYQIEESDDAVPQFHYIVGTALNQGADVCVLTQYEPAALGVPE* |
Ga0129333_100075898 | F009141 | N/A | MTENSMVPFYRSYLLNGRTIYLDKLSELSDSELHLLNVDTMAALQEARHEYENIENKQSEEAGPAYRRLKVAGYFQAAIKLELENG* |
Ga0129333_100075899 | F014614 | AGGA | MNYNAHEDYYRQSRGYNWHDMYELRQQSRPTSTEVPEVFKHMFADRAAYDAWVDERRKLYFG* |
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