Scaffold Ga0129333_10005336

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10005336
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12064
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.69%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007798	Metagenome / Metatranscriptome	344	Y
F007859	Metagenome / Metatranscriptome	343	Y
F008688	Metagenome / Metatranscriptome	329	N
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F013524	Metagenome / Metatranscriptome	270	Y
F019476	Metagenome / Metatranscriptome	229	N
F019824	Metagenome / Metatranscriptome	227	Y
F024047	Metagenome / Metatranscriptome	207	N
F072270	Metagenome / Metatranscriptome	121	N
F099167	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000533610	F013524	N/A	MKTNKIVIDRLREFTQNNCNTTLDPKLCEDIRYLCDEVERFSREIVKANNFMDEDHITIQRYKNKLKKYESF*
Ga0129333_1000533611	F009135	N/A	MNKPKYYLAINLPPNFDEVDADTIKTDLMAYINSKNQYGAMYGPKSSKKGITIDKVIYRTNED*
Ga0129333_1000533612	F024047	GGA	MTNVKKADIVDWLKNAVEKKMVKELEVPNAKVYLSCDRPHPDVILETKNADGDLQIVRFLII*
Ga0129333_1000533613	F019476	N/A	MNNKTKSARIVLDIEWESADDSDLPSLWDWKRIKMPMDLTKVKYIGIQPPNGPENASNWIGN*
Ga0129333_1000533615	F072270	AGG	MKLEKTTLNSFLKHLPTASMLEYLIELLPKCTENGPWIAGGSLHRTYRKLPLTNADVDIFFKNKEQFEKFVYDLSISSVTAGYIKIESTIYSEWHCTLTIKYMDVDWKIQCVTFKYFDNIEELFKSFDINVCRIAYDGTNVVYQDRILDDIKSNKLKFNEGSIYYPSVTLKRLVKYVKMGYDIEDVDLKLLTHAFYKSKKKAIDILDQDLMTKKPIETYEGLKTP*
Ga0129333_1000533624	F007798	N/A	MKDTTLKQMVRDRNGQPRGYVVATVINDAVRVGWSYTNTKMGDRFDKQKGFAIALGRAENGWGKNVRVPHNVSKSLDNIVKRAARYYKNVQFAWVA*
Ga0129333_1000533625	F019824	N/A	MSDYIKDNFTGSIDDLLSHCASLDVSKVEEQVKVEEKAECIKVIMAELDCNEFEANVIYDEIALSETKTVVDQMVADGLLYISGYNDEGEPLFNLTDFGKQIRKEIDKDK*
Ga0129333_100053365	F099167	GAG	MNSKIINRTIDIAKAMCPLNLEHRCSHIAFLIRCGKIVHIGTNSCKSHPETLKYDYKDHQKVGIHAELSVCMKSNKENLKDYKMVVLRVDRSGKLNNSKPCCGCQSVIDQFSVGEVWYSDKFGNVVKM*
Ga0129333_100053367	F010081	N/A	MKEQIDSIIKKHCLKMQEVNKNKSIPMIVKELDGIVYDMYRELYGLRDIRSNNYYLNSFTADDKKGHCC*
Ga0129333_100053368	F007859	GAG	MKKLLIIALLCTGCTSGMLLRYSYNRALETLPPCSRVHAINNDYITYSMIEVSTNNVYTANTNYYRAYYNTDGKITKIVKN*
Ga0129333_100053369	F008688	N/A	MNRFNKIMLGGLAAILLTAMTIEPPKIKVYLIMSYRGNDLTIEKVYLKKENAEKYRDMYKDSHNYSVEERELTE*