Basic Information | |
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Taxon OID | 3300010354 Open in IMG/M |
Scaffold ID | Ga0129333_10004110 Open in IMG/M |
Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13619 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (39.53%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 39.2637 | Long. (o) | -76.0017 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000744 | Metagenome / Metatranscriptome | 909 | Y |
F002243 | Metagenome / Metatranscriptome | 578 | Y |
F005478 | Metagenome / Metatranscriptome | 399 | Y |
F029368 | Metagenome / Metatranscriptome | 188 | Y |
F104550 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0129333_100041101 | F000744 | N/A | VQLNVHEIGVILSALQLLGLREENQIAREYGSVPALYNKLYTIYEQMDTSQTGLRNDVVPSF* |
Ga0129333_1000411014 | F005478 | N/A | MYDDYDLDYSFANDYNLDEDSYYEYGTSDLEEDYARDGQDYQDLAYRHYA* |
Ga0129333_1000411018 | F104550 | N/A | MELTKSFPPADALIETFQQVDYQKLYQDSKSFVITVAAFVAAVSTILWEKIQVMKFRTPDFLSDYVYFSVNLIGEPGDEIVGFSVGNRYVGLYDNGIAWGVLNAQGALDNQ* |
Ga0129333_100041102 | F002243 | GGA | MPDFPTLQSQDGTMQVTFYPVKTPYGDISQEWCLQVLSWKGIDQISKKFLNRVEKSLAIRDRLAHDYVVTGDNTNLPQLGNPFYGAC* |
Ga0129333_1000411030 | F029368 | N/A | MRYNPATDRAISIDEIAAQCRAAILKADERRYVDQVADRIYDEILTFYRWEDDVLIAA* |
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