Scaffold Ga0129333_10003959

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10003959
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13893
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014503	Metagenome / Metatranscriptome	262	Y
F031870	Metagenome / Metatranscriptome	181	Y
F043787	Metagenome / Metatranscriptome	155	Y
F088339	Metagenome / Metatranscriptome	109	Y
F093347	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000395910	F043787	N/A	MDVTNNIKVASVNEILATRARATFSHRINFQTIGYESLDLMREWCKDHCTGLWRLEHVHALYFQFENDRDATMFMLRWGGAEGNKLK*
Ga0129333_1000395911	F014503	N/A	MTLVAVKGGWVRTRQNTVIHHWRFEDGKTPPNSGSPFSLDPPPRGWYCWVYPNIDKNFTDWMTKNCPTADVTHRFNSGDPMYTVYIKEDKEATIFQLKWM*
Ga0129333_1000395920	F088339	AGTAGG	MLFEAFMVFYLIECLVLISVAVWYFYEPKKIAKKIYDPWGFWGKEK*
Ga0129333_1000395928	F093347	AGGAGG	MKQKRLIAELYKACFDHDAKKMAELKRLEFQKILKRKAEGKHFTHRWTIVQI*
Ga0129333_100039597	F031870	N/A	MVILWAKKMTTDYTDYMVLPCGGVAYYDEPRFGMNYFCAQCEVIVGSDIMPQKCKDEEAKWELQKMLGGKGWDYFAEPDEYF*