Basic Information | |
---|---|
Taxon OID | 3300010354 Open in IMG/M |
Scaffold ID | Ga0129333_10003959 Open in IMG/M |
Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 13893 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (60.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 39.2637 | Long. (o) | -76.0017 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F014503 | Metagenome / Metatranscriptome | 262 | Y |
F031870 | Metagenome / Metatranscriptome | 181 | Y |
F043787 | Metagenome / Metatranscriptome | 155 | Y |
F088339 | Metagenome / Metatranscriptome | 109 | Y |
F093347 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0129333_1000395910 | F043787 | N/A | MDVTNNIKVASVNEILATRARATFSHRINFQTIGYESLDLMREWCKDHCTGLWRLEHVHALYFQFENDRDATMFMLRWGGAEGNKLK* |
Ga0129333_1000395911 | F014503 | N/A | MTLVAVKGGWVRTRQNTVIHHWRFEDGKTPPNSGSPFSLDPPPRGWYCWVYPNIDKNFTDWMTKNCPTADVTHRFNSGDPMYTVYIKEDKEATIFQLKWM* |
Ga0129333_1000395920 | F088339 | AGTAGG | MLFEAFMVFYLIECLVLISVAVWYFYEPKKIAKKIYDPWGFWGKEK* |
Ga0129333_1000395928 | F093347 | AGGAGG | MKQKRLIAELYKACFDHDAKKMAELKRLEFQKILKRKAEGKHFTHRWTIVQI* |
Ga0129333_100039597 | F031870 | N/A | MVILWAKKMTTDYTDYMVLPCGGVAYYDEPRFGMNYFCAQCEVIVGSDIMPQKCKDEEAKWELQKMLGGKGWDYFAEPDEYF* |
⦗Top⦘ |