Scaffold Ga0129333_10003307

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10003307
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15079
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F011755	Metagenome	287	Y
F012447	Metagenome	280	Y
F013987	Metagenome	266	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N
F023328	Metagenome	210	N
F082594	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000330710	F018353	AGG	MSKPKSKKQTIELPDVMASELVRIINTAHEDGKLITGFVAILEMFDGKKKTIKITANADMPQHSVFGIINFAAEKYQFTIAPDEDDDDDFYDPNWFDGQ*
Ga0129333_1000330715	F023328	AGG	MTVYTPTYRVTIAGTVQTSTTLEDATITYGRNDFFEATQPSYCNLELLNLDGTSPVVELLDTIIIEVTDSTSAYVKLFTGEVSGVYNRFAGAGAAGKPNTLQIQAVGALGLLVKRYAGSVAYPEELDGARIQRILEETLYIAWEDLSNTLTWNDIPVTETWANYGVQGIDTIDAGRYEVLARPAEIDQAYNLTDTTQQSGLGYLYDTTDFKIGYADAERRSENYAANLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVVAQNDTSINNYGLLEEVRSTILAQTVDATEQATNFVNYRGTPKASLEEVTVNLANSNMTNTVRDNLLGVSMDTLLYLDNIPVGLIPEGSFEGFVEGWTWTLGRNNLELAMSVSNSIYSTLDVQWEDYNALIQWQNLANDYRWLDVI*
Ga0129333_1000330717	F012447	GAG	MARAISLVPVDRDYKSLLRTFGKMDDIAKNDMKQIAKDLAERGAAYAQGSASRAPYNPKQAVAVAESIKVSKSDKAPSFSIGGRQKVGASAFSAGYVIMGAEFGSKQYKQFPRRSPSQGRGNRGWWLYPAMSRFQPTIAREWLAGFEKVRDAWTGRV*
Ga0129333_1000330718	F008616	AGG	MLKLKIRWELETGEVYEEWTRPNELAQAEKELYNNRSIIKILTEESSPSNQLLLFLGHKIQQRVTKKMENFETWKSKVTDIAAVDFETANFTKPEVSGA*
Ga0129333_1000330719	F008811	AGGA	MATTVLSGRQLSLSVGGKTYSEQILDSAINFDTERLTFDTLAGKAYKYIDSNVTLDLTFLNDAGATPNSLYGDLWTATETAPDTTLAFVLTLRTGVTLTGTVLPNYPGVSASGADAQQVTVSLQVVGIPTEDLTA*
Ga0129333_100033072	F011755	N/A	MTTIYLHYHYDYDNSQEWLCRDAKCYQKRLEDKKKLEAYQELVDRDLMRKENLQMIEDMIQDPRIDNYNQY*
Ga0129333_1000330725	F013987	AGGA	MGLREEKQRILPALDKATEEAQRQGFITELDLAGIAALFTIAGVLDSGLLKPMEEIKYLSQLQSGLDKYGLSLFGRKEKPELEAGEDPLDDLRKLTPENSDHSTSSPN*
Ga0129333_100033075	F082594	AGGGGG	MKPQDVYRLEQVLRLSISQDLLSKQSNFHSKEDMEEARKIVEKKH*
Ga0129333_100033079	F014609	N/A	MINELIGITGLLITVLVLVIKATTEIIKMKSQLFPNGGSSLADKVTRLQVEVSKISATMDSISKELGKPKRKR*