Scaffold Ga0129333_10001184

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10001184
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23324
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003408	Metagenome / Metatranscriptome	488	Y
F003689	Metagenome / Metatranscriptome	473	Y
F014144	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000118420	F003408	AGAAG	MPELIQTFKSMQKTEDEKRRFLASLQGVNLNEQEETEGPSFDDIRRKAMGVTANGDDIVSLQGSFASEAGFGIGAGLGYSKE*
Ga0129333_1000118423	F003689	N/A	YEDNWLVCCEQILFTIYTTDVSEITEIRNFMTDLFRRMDDSARDINRSGTLNDKFKFHSIFIADISPTEPSEELQGFFSSDVIIEAKYSRITDLNGRFQ*
Ga0129333_100011844	F014144	AGGCGG	MSARLVICDKCNKEIELRWGIFAHDTLSRHLKAEHK*