Scaffold Ga0129333_10000900

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000900
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26245
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F021091	Metagenome / Metatranscriptome	220	Y
F035650	Metagenome / Metatranscriptome	171	Y
F098749	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100009001	F001360	AGGAG	MSLAKFRKVHSKTGSGRFVVSEGVAPSAYLLPHPGLPTWYLDSEDDRFEIVIPKGTILSVVADSNGDARVVPANGTSSSKGWGDVMPSWDPLDGATPTSTTGSDDTVTVPARSIPIGCAQYDLYRPFDKGTSQGAGFITHGYVEYPMVDGINADVTVGSLIRADHMGRPVKAAAADFFNSNAAYSYLQVGKVVEVEQFATNFDDGLLSYMQLPSDPGALKTVYELTRSGTYNGKLGIRANLDVDHV
Ga0129333_1000090017	F035650	GGA	MSNLEKRSKEKFLQEFESLRPDLFFPETWTDEEKQKAVELVRPQKTRTSMFSSIPMNCEAHKCTFADTCPLLKENLAPKGNPCPIEMSIVAQFTSEYMDQLDVHPDNLVEVSMVRDLVDQEVQYIRKTKLLAKEHFVQENIIGVDNDGMPILKKELHLAVELEDKLHKRRKDLRNQLLATREAKAKVGQSQLDSAQAISDILHKVQNIELQREKLLKQKLGTYDKDEYIDVPDIEELE*
Ga0129333_1000090018	F021091	N/A	MIMNDWKKFTDINGDFQLANFLYKGINDLMKQALDMGTLLSNDAHKLRAYKEQTKKLFKNKWFEIAESLEFFDIIEKCMCFNEEKDFYCDLCKGSRYKLSSYLTSDEIREVGIFYNAAQNAELANKLQKGLMKALDELSEM*
Ga0129333_100009003	F098749	N/A	MKLVIGCPTYKRTWLLPHWIRCLVNQSVSLKDVGFIFEVSPDDQDTINSLEAWKRFDKRIPYFNIKIREDIPHFQHENNGRQWTMSKYVNMVSLRNSLLETVRDVSPEYYFSLDSDILLTNPNTMELLIAHIKSGADAVSPLMFMTPIGTMYPSVMNWREDVPNKAYRKEKYDLGTYFKSDVIMAAKMMSKNVYQNIEYSVHEQGEDVGWSLNCKNKGYELYSASYIYAPHIMSEFMYDSFLKNGDDRNLIANKNYAKV*