Scaffold Ga0129333_10000068

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000068
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61075
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (80.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015338	Metagenome / Metatranscriptome	255	Y
F020170	Metagenome / Metatranscriptome	225	Y
F023844	Metagenome / Metatranscriptome	208	Y
F064724	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000006817	F015338	AGGA	MALKNGKPNPLNYFDLRRVGFAAPHFKYVTIEKFSPIYIKQLDSWIKKNLNHRYYIGPSISLDNSNTIIYTTKLGFESEKELSFFTIACPLFQSR*
Ga0129333_100000682	F023844	N/A	MKPETPAQGVLQVNDWGHSKMYKAVCQCGNDDCTHTIDVEAEDHGDVIVTIYTKVRTNFWSMTRWQHIWQLLIRGYTDLETSIVMNKQVALNYSNVLQSAVNDIEEFRNKKNVKN*
Ga0129333_1000006849	F020170	AGG	MSKHVEPLDYQDEETHEQLMTAFREYFKSNQEWVNKGTRRAGENSRYWLAQIRIIAKARREKIQQYRVHLDRTKAQKKGSAEEE*
Ga0129333_100000685	F064724	AGG	MELWQKVKDFWVRSYTSDRRAFYYETVASACVFISMTWISITAQHPPMHLIYPISFTGAVFSILAFVRRGAGWPLVMTCYFACLHVFGFGRAMGWY*