Scaffold Ga0129333_10000039

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000039
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69453
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (52.25%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F000919	Metagenome / Metatranscriptome	834	Y
F001968	Metagenome / Metatranscriptome	610	Y
F004546	Metagenome / Metatranscriptome	433	Y
F004898	Metagenome / Metatranscriptome	419	Y
F008402	Metagenome / Metatranscriptome	334	Y
F017818	Metagenome / Metatranscriptome	238	Y
F027765	Metagenome / Metatranscriptome	193	Y
F074911	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000003915	F000919	GAG	MRFRNIEFRWSKHNNKYELVKWNESPNSDTCYVIAFFDKDKEGYDMRTIGDRFFEDKDAWIVGKYALGFLNAIFDIEKEEEELE*
Ga0129333_1000003916	F017818	GAGG	MNKDAYYSWIEDNDTYPEHSHKWIVGLYNKYEGVEAFHRYFGTFETKLQAKEFAADYREKYTKPGFISSVRVFPLCEVVEDT*
Ga0129333_1000003917	F008402	N/A	MNIYTQIHIQNHAGYFYTAEDTHLDVGGEGFTVSYWEGTERVNNICMDKEEALALADAIYKLYKN*
Ga0129333_1000003918	F074911	N/A	MTDEEVLKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFLLGYYEGSGEPQ*
Ga0129333_1000003929	F004546	N/A	MDYTEEFPFDQFPWKLVYKDGKETRKCYFQSEEHRKKHIDRYKLKKNEIKLSYKYD*
Ga0129333_1000003939	F000345	GGA	MTEPNDLGKALQVWWDSDACKQLQKDLEEGKQRAVGKYFMLSEEDKLDMVQAICYIMCKAESEGTSHRGLQDALGIYPSGFWIDHLMDCHNALYEYYDKRKQKEELEKDIETLKSFLEDKDK*
Ga0129333_1000003946	F004898	GAGG	MDLSELIEELREIEIYGSDPVDWMGYLYDDDYWVPDTELAY*
Ga0129333_1000003958	F000744	GGA	MTQPNVNFEIKFTEVPVQLNVHEIGVILSALQQLGVREENQIARDYGSVPALYNKLYSIFELMDRSETVLRNDVVPSF*
Ga0129333_1000003961	F027765	N/A	MNNEDIAQFMNAYEDFMQHAEVEQFNHEAWVAAKQYTNHYYEQKAAELEVTVDYYIQEFV
Ga0129333_1000003973	F001968	GAG	MFDEMWSEIQDAPGEIFDLDIPELRDTEKFDVNEYLNANYDY*