NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129333_10000039

Scaffold Ga0129333_10000039


Overview

Basic Information
Taxon OID3300010354 Open in IMG/M
Scaffold IDGa0129333_10000039 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69453
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (52.25%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Associated Families10

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F000744Metagenome / Metatranscriptome909Y
F000919Metagenome / Metatranscriptome834Y
F001968Metagenome / Metatranscriptome610Y
F004546Metagenome / Metatranscriptome433Y
F004898Metagenome / Metatranscriptome419Y
F008402Metagenome / Metatranscriptome334Y
F017818Metagenome / Metatranscriptome238Y
F027765Metagenome / Metatranscriptome193Y
F074911Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0129333_1000003915F000919GAGMRFRNIEFRWSKHNNKYELVKWNESPNSDTCYVIAFFDKDKEGYDMRTIGDRFFEDKDAWIVGKYALGFLNAIFDIEKEEEELE*
Ga0129333_1000003916F017818GAGGMNKDAYYSWIEDNDTYPEHSHKWIVGLYNKYEGVEAFHRYFGTFETKLQAKEFAADYREKYTKPGFISSVRVFPLCEVVEDT*
Ga0129333_1000003917F008402N/AMNIYTQIHIQNHAGYFYTAEDTHLDVGGEGFTVSYWEGTERVNNICMDKEEALALADAIYKLYKN*
Ga0129333_1000003918F074911N/AMTDEEVLKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFLLGYYEGSGEPQ*
Ga0129333_1000003929F004546N/AMDYTEEFPFDQFPWKLVYKDGKETRKCYFQSEEHRKKHIDRYKLKKNEIKLSYKYD*
Ga0129333_1000003939F000345GGAMTEPNDLGKALQVWWDSDACKQLQKDLEEGKQRAVGKYFMLSEEDKLDMVQAICYIMCKAESEGTSHRGLQDALGIYPSGFWIDHLMDCHNALYEYYDKRKQKEELEKDIETLKSFLEDKDK*
Ga0129333_1000003946F004898GAGGMDLSELIEELREIEIYGSDPVDWMGYLYDDDYWVPDTELAY*
Ga0129333_1000003958F000744GGAMTQPNVNFEIKFTEVPVQLNVHEIGVILSALQQLGVREENQIARDYGSVPALYNKLYSIFELMDRSETVLRNDVVPSF*
Ga0129333_1000003961F027765N/AMNNEDIAQFMNAYEDFMQHAEVEQFNHEAWVAAKQYTNHYYEQKAAELEVTVDYYIQEFV
Ga0129333_1000003973F001968GAGMFDEMWSEIQDAPGEIFDLDIPELRDTEKFDVNEYLNANYDY*

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