Basic Information | |
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Taxon OID | 3300010354 Open in IMG/M |
Scaffold ID | Ga0129333_10000039 Open in IMG/M |
Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 69453 |
Total Scaffold Genes | 111 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 58 (52.25%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Associated Families | 10 |
Taxonomy | |
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All Organisms → Viruses | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 39.2637 | Long. (o) | -76.0017 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000345 | Metagenome / Metatranscriptome | 1253 | Y |
F000744 | Metagenome / Metatranscriptome | 909 | Y |
F000919 | Metagenome / Metatranscriptome | 834 | Y |
F001968 | Metagenome / Metatranscriptome | 610 | Y |
F004546 | Metagenome / Metatranscriptome | 433 | Y |
F004898 | Metagenome / Metatranscriptome | 419 | Y |
F008402 | Metagenome / Metatranscriptome | 334 | Y |
F017818 | Metagenome / Metatranscriptome | 238 | Y |
F027765 | Metagenome / Metatranscriptome | 193 | Y |
F074911 | Metagenome / Metatranscriptome | 119 | N |
Protein ID | Family | RBS | Sequence |
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Ga0129333_1000003915 | F000919 | GAG | MRFRNIEFRWSKHNNKYELVKWNESPNSDTCYVIAFFDKDKEGYDMRTIGDRFFEDKDAWIVGKYALGFLNAIFDIEKEEEELE* |
Ga0129333_1000003916 | F017818 | GAGG | MNKDAYYSWIEDNDTYPEHSHKWIVGLYNKYEGVEAFHRYFGTFETKLQAKEFAADYREKYTKPGFISSVRVFPLCEVVEDT* |
Ga0129333_1000003917 | F008402 | N/A | MNIYTQIHIQNHAGYFYTAEDTHLDVGGEGFTVSYWEGTERVNNICMDKEEALALADAIYKLYKN* |
Ga0129333_1000003918 | F074911 | N/A | MTDEEVLKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFLLGYYEGSGEPQ* |
Ga0129333_1000003929 | F004546 | N/A | MDYTEEFPFDQFPWKLVYKDGKETRKCYFQSEEHRKKHIDRYKLKKNEIKLSYKYD* |
Ga0129333_1000003939 | F000345 | GGA | MTEPNDLGKALQVWWDSDACKQLQKDLEEGKQRAVGKYFMLSEEDKLDMVQAICYIMCKAESEGTSHRGLQDALGIYPSGFWIDHLMDCHNALYEYYDKRKQKEELEKDIETLKSFLEDKDK* |
Ga0129333_1000003946 | F004898 | GAGG | MDLSELIEELREIEIYGSDPVDWMGYLYDDDYWVPDTELAY* |
Ga0129333_1000003958 | F000744 | GGA | MTQPNVNFEIKFTEVPVQLNVHEIGVILSALQQLGVREENQIARDYGSVPALYNKLYSIFELMDRSETVLRNDVVPSF* |
Ga0129333_1000003961 | F027765 | N/A | MNNEDIAQFMNAYEDFMQHAEVEQFNHEAWVAAKQYTNHYYEQKAAELEVTVDYYIQEFV |
Ga0129333_1000003973 | F001968 | GAG | MFDEMWSEIQDAPGEIFDLDIPELRDTEKFDVNEYLNANYDY* |
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