Scaffold Ga0116239_10080319

Overview

Basic Information

• Taxon OID: 3300010346
• Scaffold ID: Ga0116239_10080319
• Source Dataset Name: AD_USMOca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2803
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016798	Metagenome / Metatranscriptome	244	Y
F068738	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116239_100803195	F016798	AGGAG	MKKFIIILLLLTLVSCEKEFKELQRSYVISNFIELNNDLDFKLIYFCDKYNAFEHFYDVKNTILNEIGEYNYYKDMQSRMAVVSHTKDTGTCQFQNKTFYYLANKYNISNANILNEKHQIAVMVQAFKDGKKNYWNGYKKYKKI*
Ga0116239_100803196	F068738	N/A	KNIDTVIITKYKQKIDSVYAYNYSDYISFYDTLLHTNLQKSDTFICFDSMSVQKLTTKILHLQQDSELLANCYIQNNLYTNIINIQDSVIMLKDSVNASLEAMYKQKVKKVKKQRNIATSIAFTELLILIGVLAK*