Scaffold Ga0074044_10011763

Overview

Basic Information

• Taxon OID: 3300010343
• Scaffold ID: Ga0074044_10011763
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6589
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000275	Metagenome / Metatranscriptome	1391	Y
F006757	Metagenome / Metatranscriptome	365	Y
F050089	Metagenome	145	Y
F073812	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074044_100117633	F000275	N/A	MTVKTELSAPKRRTRAEVQQLVAEFVSSGIRRSEFCQSRGLSFSTLDRHLKKRRWKRRRKSVSSAGRLVPVELAARKSPTRQEPSCGLAVVLPGGRRIEVHPDFDTNTFERLVNALERV*
Ga0074044_100117635	F050089	GGCGG	MAGEVFVFDAPPGREMCDFCSASPTARLYACRNFVVPRTKHAIFQHESIGAWSACDRCAVLIDAGHWSQLTDRAYRRFCKKHGVSRYEEFEVREQLAEIHQLFKEHMIKEV*
Ga0074044_100117636	F073812	GGAG	MTEPRQELESALLPLAWILNFIWGTIQLMFWFFMFPILIVCWCFYHPAEARVYFVSAIPLLWSGNWGIRGLLVFFVLLIASQFGKTMHRICWGIIKLALVAGLIWYIYMIFKLA*
Ga0074044_100117637	F006757	N/A	MRDVAVLPPIKATVRAALLSLAAYKEIPTPQLIAAARALPGGTKVHCPDRLTAIVLLLGTRLMELN*