Scaffold Ga0074044_10000075

Overview

Basic Information

• Taxon OID: 3300010343
• Scaffold ID: Ga0074044_10000075
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 95395
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (64.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035012	Metagenome / Metatranscriptome	173	Y
F052904	Metagenome / Metatranscriptome	142	N
F090734	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074044_1000007516	F090734	GAG	MILFGSLLAANASVGPCGGTALSVEPFPAILVTIFGLELIVCSYFLVKKLRVEADFRVIIYLFLLMWSMSLLMAIVVRVRAGSPPASEDISDFYFSFLRGLAAVANLILFYRWAGTKNMITRLW*
Ga0074044_1000007525	F035012	N/A	MSFAVLILFLLVWALRDPRKRSRSDGDLDSNQGFGQRHVSYFPQVRQALAAEDFAFLSSRGSRELTRRMRKERRKIALAYLSCLREDFLKLWRLARVIAAMSPQVGVAQEIARLRLGLAFSLRYEMIRIQFFFGFAPLPELGSLSDLVSRLSIRLETAMQNLGERAALASRLASSLDDGHGLDTP*
Ga0074044_1000007533	F052904	N/A	MEKLKAFQDVARINGFVDVEETDDGTVLWLKKPTANAEDRMCVDSLTNSVTVFWATMPWKINSKTFRAVSALQEWFALTTRQAASMTNRDALLRLSADKHDATAMAALCHNNAELLRTSIARFFESGAVSEKAQSEVMQRVAEHARSYHTDQEPDQWLTKSLNTECDRLRNEAIQAKANKA*