Scaffold Ga0116252_10012364

Overview

Basic Information

• Taxon OID: 3300010342
• Scaffold ID: Ga0116252_10012364
• Source Dataset Name: AD_JPNAca1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8777
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 37.43
  • Long. (^o): 138.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049598	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116252_100123645	F049598	AGGAGG	MKKLVVAALVATAFLVLCAPALAWPVAQKWWQPSPHFTCVGKIQAVDTAASTVTVRVHLANHGAADYLGEDLTVTVAPDARIFKAAGSYHKRIALGDLIVGEKLRVEGRIDYSSGSAAFIGKRLVMRRLPINEIRRFAFRGPVTAADAVAGTLTARMNRVTRALSPYYHGTCDFVVAPDARIWVMKDGWPVKATLADVVVGDRVYAQGSADRSTPSAPVFTIRWMIVRHAPVE*