Scaffold Ga0074045_10015121

Overview

Basic Information

• Taxon OID: 3300010341
• Scaffold ID: Ga0074045_10015121
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6232
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024667	Metagenome	205	Y
F027459	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074045_100151215	F027459	GAGG	VPDGLIRWPWRVIALVLIAALGYFIWRGYQQPELILDFGNVRLCLGAGAAAA*
Ga0074045_100151217	F024667	GAG	MFGFGKTIKDPLGDAKTAERWLGLFPTNDPLALHGAVLAELGRLTERVAKRTPSRLEAVFLADRYTDPLRKNLTGQYLEHGNRSTRVENQLWQALFDLTQGFLLCYQAFAREVTDHAQSNKWQSLLPELIARQITHQGLDAKVRLFRYEQWIPAKWTDLHALFQMACSAQLERNPVGVLADGGLTTIEQEYLRVLVLQLMNSGNLTPRHLEWVAEQLSEWCAPLRLTLESSTVTSFYVDLGARTGLKRRAPQPLEGRVLFLDTRPLHAVLMQNVVMLDQKVRNNPLSDRTPRRADQLNLLSKLASQVDPEFKPFVRRGERTSAEGSVDAIIGFSRIAGFLHEEEAEPYVEGRRSPGTFGDTIEIATFGRMRNENVRVAEAARRRLANFAAPGGPWDIRDVSQTGFRLVAPMSVINAVTLGTLAAIRPPAQMRWSLGIVRRMKRLTTERAEIGLQVIANNLIGVELTEAKRDDPEVLIGGDVSTLSKRRFNGLFLSLRKRDSETAVQTLVVPPGEYQPGKRLYMSAAQSSQRIAFGRVLEQHPDWVWATVEPLLTAPQAASSTTT*