Scaffold Ga0074045_10003981

Overview

Basic Information

• Taxon OID: 3300010341
• Scaffold ID: Ga0074045_10003981
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13187
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015120	Metagenome / Metatranscriptome	257	Y
F059669	Metagenome	133	Y
F076450	Metagenome	118	N
F079694	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074045_1000398110	F076450	N/A	MRGDSQGRSVQIGRYLNAPMVLNLGGTSASVQLNPSRHYRLWGSVDLFFQFGPTGVTATLNSHPAAAKLDYLHYTDDINTTLAAIVSSGTGVLFISEIDAQGV*
Ga0074045_1000398111	F079694	AGGAG	MPTYQNATPPSALYPGDVGYSWNNEVFPGANTSGAQFALSTPGGYAPETGFTVRWQTIFGGAPSAISIKLQGAMADVDAEYQDMDASTQVAGEARQVTGVQAKFLRIKLYSSTGGSGLTAKILV*
Ga0074045_100039812	F015120	AGG	MLEFIKRFFKTRYVGMLEEEVTRLRAENRALLNSLLGTAGFPPVEFAEPVKPVELPRLRKRSWQQMQRKNELDAMKG*
Ga0074045_1000398120	F059669	GGAGG	VNPYYTQPPWEFLLTASRNPLQSYQLSSLAHAANLRKELGALLDQYLEENTAAMLARWLMDQRERTVLEEKAASAPARPENKGRRASDNFLGERIAPPRASRGPS*