Scaffold Ga0116250_10520017

Overview

Basic Information

• Taxon OID: 3300010340
• Scaffold ID: Ga0116250_10520017
• Source Dataset Name: AD_USOAca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 672
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 37.8
  • Long. (^o): -122.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116250_105200171	F003327	GAG	MINEFTQLAREVQDAIANGDYTHQKYLKFREWYFQNYDGSKRNANRDFKMFDLMYGLDVPIKNNDNEDI*
Ga0116250_105200172	F003299	N/A	MKIYKVVFKTFDYWNGPVKLVTRIIEAYDRNHVKQLIQKNDDLIMLIEEI*