Scaffold Ga0116250_10048291

Overview

Basic Information

• Taxon OID: 3300010340
• Scaffold ID: Ga0116250_10048291
• Source Dataset Name: AD_USOAca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3135
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 37.8
  • Long. (^o): -122.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055749	Metagenome / Metatranscriptome	138	N
F103315	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116250_100482914	F103315	GGAGG	MITVEIYIFLAAVVAAAFVYIFLDLDNRLYGNLFAAAFAGILSGLLALWSFNENTVTITTVPQTAIAVQHALGTNVTTTYAYQTHIVPIVDPALGYFWMLVMVFMWFLVGYFVLEIMHESRMPDDEEVYE*
Ga0116250_100482916	F055749	N/A	MNLIIAIAIGILTLIAIFSVIPVVGGSIDNAMPPLAEDSDWNTTTNPDLPSGASMWSQLGPLLVLAVLALVIGLVIMYFRNAAG*