Scaffold Ga0074046_10027145

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10027145
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3932
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029541	Metagenome / Metatranscriptome	188	Y
F040823	Metagenome / Metatranscriptome	161	N
F068065	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_100271452	F040823	GAG	VNRAPCWESEQEAIITFFTDDGDVWGFPFFGLLAAQYTARNHTLALQWQGAQVRIQGPRALDFYTAFAKGSATGIKSNGADILSVQLIQPPSPSPAAAA*
Ga0074046_100271455	F068065	N/A	MSQPTSIQILDTAIWKELAAEEVAESEAFYDALATLLSRWLLARSEYSEMEAIKLFAKVRAYVANPERFL*
Ga0074046_100271456	F029541	N/A	FKELTKNPKVKTGKVFAADVRRSKIHPTVRKLTAWRKANRLSQRKAVAVLAQYYFHATFASLRSWEEGRRAPNPHTAKILEQFLADHPTVDRPKK*