Scaffold Ga0074046_10000846

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10000846
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28209
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001118	Metagenome / Metatranscriptome	773	Y
F007481	Metagenome / Metatranscriptome	350	Y
F020228	Metagenome / Metatranscriptome	225	Y
F032347	Metagenome / Metatranscriptome	180	Y
F052115	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_1000084612	F032347	GAGG	MAIVVDFDARNNILRATLEGRMTRGILLDLYAAATEYMASHPPCRGILDFSRVTGFEVSNDAIRQLAASPPAFPAGYMLVLVTPKAFMYGLARMFQILSEKTRPDLQVVRTMNEALRLLQVKSPEFRPVR*
Ga0074046_1000084617	F052115	GAG	MNTLIHLKRHGEVHFHLHPLLETFSLIASFLLAVLVVSMLVSSAR*
Ga0074046_1000084618	F007481	GAG	MRQPPNVNQRLDEHIPRALNKIKKPSTAEEITELLNRDLGPGDRPFQTKEVATWLRNAGDKVLSLYWLENRPRR*
Ga0074046_1000084619	F001118	N/A	MPVTTDLQNLGDAQLCREIAASIEHALSDKRGAWRVSIAGSRASENWEMRVEGPNGFERTYTLAGAAGEHKPEVIRRLILQLVPTGSS*
Ga0074046_100008466	F020228	AGGAGG	MLCAELEELEAEFDDILTALENPHLTEQERRSLQAAYSRLSHTIRDHQEHGHDGGPCFEE