Scaffold Ga0074046_10000579

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10000579
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33678
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (77.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_1000057910	F013913	AGGAGG	MQVTPTVRGSFFAGIGLWVLVWALLFKGDEIAKAGGLERWVSSDRCLRWIRNHKSTSLIGTELCNYAHTGLDPLGVTFALGGTLTNVLVIYVLLPMLDRAKRGGKALNLQF*
Ga0074046_1000057911	F025336	GGAGG	MALIALIAAAEAMLYSASRSKRGQTRRQQVLMGNNLDSVRALPLVDDYLKRKAAGASRIQTFVASKLAEICRQVVHTRSFEYLVLHLIRTAIKRRNKYLNIQRRVTICK*
Ga0074046_1000057912	F014639	AGGAG	MSEITQSTNSPASMETGFLNRKWKSILFFFAKRAFESKLEGILRAAAGHEGNSLPVGNSQYQLLSAEADVLCTDFADRWGLDVDLLGARIPGLAKLAGLSVPPPTKNYARLACFGLVAIPLALFLMGAMAGLVSAGFRLVGGR*
Ga0074046_100005798	F020887	GGAGG	MRTKITFYGEIAGNIWMPAVECTKAFHLELIRIPRNSTTRTYPGIAPRSMEITCLRDALLHLTNDGDFQSCSITWARLEVSHYFGDETRGTRTVKTRTRVWELRGQGQDADCFAEVGS*