Scaffold Ga0074046_10000009

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10000009
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 188982
• Total Scaffold Genes: 158
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 118 (74.68%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015543	Metagenome / Metatranscriptome	254	Y
F027936	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_1000000962	F015543	GGAGG	MQWNSHFAPARFLLIVILCLTTLHIAAIPKPLPDAVVRAHTIFLVNETSFNELQYSTIFELNKWGRFDLAESPEKADLIMRLDSGSHVRPVPEGQFPSGGGVNAVDEGEIPKGCTRISLLDPKTNAVLWSDTHKTDGGKVKNGHLLDGLREAFDAYEKSRR*
Ga0074046_1000000979	F027936	N/A	MSTTPNVITVEEENLLQRIKGACGAALFLVIQSSPKILNLYRNEQSWTLFRFALGCFGAALVVLPLSLWHGYFTAVFGLLFFVLSILLPPAELESATDRKARELGAQTVVSGGDYQPGNAPATGVQLFISPSHTWAMDKNHDPLVVITTAEIAKLDVLAQENHWLLVVRWGDHKAEFLYKGIFAERFARLAEESLRQASLASQPPAPKSRAVGHA*