Scaffold Ga0116245_10180391

Overview

Basic Information

• Taxon OID: 3300010338
• Scaffold ID: Ga0116245_10180391
• Source Dataset Name: AD_JPMRca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1166
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 36.29
  • Long. (^o): 139.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036462	Metagenome / Metatranscriptome	170	Y
F042607	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116245_101803912	F042607	AGG	MAFRIIDNKKVDMTQDEWLMYEKIVKSYTIGTNKGEDLFIDLFEVDSDGIIIFLKPPSKRQTSFEVFLFLMSLMQHQHLRLMHAQIDDLCAQVKQKIKK*
Ga0116245_101803913	F036462	AGAAGG	MSQQVRLSDFMGSDLEEDFSNFDLSEIQLVLEKLQDVDAIDLAHAELLQQQALRGADVITEYLGKIVKTVGYLEAKVNSTKNKVSLEYHAPDGSRTTADMKKWAGESSPEVEAVQIKLAKAKGSKLVLERKYEILIKSHHHFKDIAN