Scaffold Ga0116245_10094671

Overview

Basic Information

• Taxon OID: 3300010338
• Scaffold ID: Ga0116245_10094671
• Source Dataset Name: AD_JPMRca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1790
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 36.29
  • Long. (^o): 139.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085731	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116245_100946713	F085731	AGAAGG	MSEQLLPLAVWVQVAYGDLRGRATQAWAARHEEDGIDEAVTKMIWLAVGIVVAIAAAAFFRSTFETAKSKVPSP*