Basic Information | |
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Taxon OID | 3300010334 Open in IMG/M |
Scaffold ID | Ga0136644_10047888 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2766 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 3 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F030670 | Metagenome / Metatranscriptome | 184 | Y |
F032536 | Metagenome / Metatranscriptome | 179 | Y |
F034827 | Metagenome / Metatranscriptome | 173 | Y |
F048123 | Metagenome / Metatranscriptome | 148 | Y |
F062447 | Metagenome / Metatranscriptome | 130 | N |
Protein ID | Family | RBS | Sequence |
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Ga0136644_100478881 | F062447 | AGGAG | MKHKIFWEKNNRVKGIVPQEQIINKTSTDKFPCDAVTIRMYNLNSKNPTATAYFYGKEAQYTNWGGNYTMAETKLMVTFDKNNQGYSFNGAVKSFSLQDLKEVLKSVRETINKL* |
Ga0136644_100478882 | F032536 | N/A | MSQKQTFEELMRSFRFHKNPILNWVLGNNNYLYHTFLNTKWKVKNVLQKLTRGFSDSDCWNLPQSTAKFLLPRMKHLRQNYHSLANRHHLLIDGKIVPYVGKEDNYEFDEKLGCYTDKTTGLGLSLDEKEYEYILDEIIFALQMIVDEDDINFSLEEIYEVYPKGFDPIKDRQMFLTKQDSGDYLVEFEQKENIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD* |
Ga0136644_100478885 | F048123 | GGAG | MKPRYDFNKGKLISYDGEIIEFASSALADKYSDQVEEIMRLLNLKKGQYLITDESTIGDFGKETINKVLLEKFKKKYGFSLTNNSNISKIAERMYNFRPF* |
Ga0136644_100478886 | F034827 | N/A | MKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL* |
Ga0136644_100478887 | F030670 | N/A | MKVIRYIKELEDEFGKPLDKWAVYEEIHKPNYPHAKFIDAKIVKTFVSPYHARNWMENDGKRTN* |
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