Scaffold Ga0136644_10042519

Overview

Basic Information

• Taxon OID: 3300010334
• Scaffold ID: Ga0136644_10042519
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2963
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F039497	Metagenome / Metatranscriptome	163	N
F062447	Metagenome / Metatranscriptome	130	N
F082149	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136644_1004251910	F082149	N/A	WCIGRWFGRNNNLEIRVTLPTISLGFKKEDDDKWFGFKFSLRTDISFESYEYGKIFTLILFGFGVKVSKFNL*
Ga0136644_100425192	F062447	AGAAGG	MKHKIFWEKNSRLKGVVPSAQIINKTSTDKFPCDAVTIRMYNVNSKNPVATAYFYGKEAQGSSWNGTNYTFAETKLMVTFDKDNQGYSFNGGVKSYSLQDLKEVLDSVRETINKL*
Ga0136644_100425193	F024040	GAGG	MNVYVTGHNWLAKVDIDTKVVGKNDWYNEACTRAVESVLDQEEKEGVELKIQDYDDFGLGVILLTYLEKDIKKEGEHRVLLTSNVLANAGRWEEYKFVKDYEEKAKEEGL*
Ga0136644_100425199	F039497	N/A	MSEEDNFDCQAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNLDAEGENEDEI*