Scaffold Ga0136644_10000858

Overview

Basic Information

• Taxon OID: 3300010334
• Scaffold ID: Ga0136644_10000858
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24383
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (29.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016772	Metagenome / Metatranscriptome	244	Y
F032917	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136644_100008586	F032917	GAG	LLCSCTTVTPDKVNDEIASYDASTPTGYDVQNSGFIGFFDDGRGIITPFGLLRYNTLIKTYKIRFKSFKGVDLNENDGTVEFTDKKGNKLYIIDQQHLVYYAVLNSWRKDGKEPDSIWDKAKDLVK*
Ga0136644_100008588	F016772	AGG	MNNLSNYMKNVLPFILIPFLVAGCVTTGPDNRVDPAQTVENALPYIAPAVTLTCTVVLDQAVSGSDRVEKAKMINNVATIVEGLTRGSTPTPDQLQKALTDYLPVEKTHWAKYVVAIKDLYATQFNKVGGNTKLAVDVLNAIAKGCKDATESYVD*