Scaffold Ga0134080_10043204

Overview

Basic Information

• Taxon OID: 3300010333
• Scaffold ID: Ga0134080_10043204
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1754
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002331	Metagenome / Metatranscriptome	569	Y
F005023	Metagenome / Metatranscriptome	414	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134080_100432041	F005023	AGGGGG	MKRTALTLGLALLATPATAQWLGEPAWNHPNAGTGFTIYGDYTQPSSEAGGGNAFGGRITLGAGTFTLTGGVSSWKKDLVSERVTTFGGTAAFRLVGGSLIPVALNLQLGGGHSLEITSSTTTVPVQTTLLAAVGLSVPLPTPVVRVEPFVSPGIRYHHYANAAPNQTNFGWVIGGNVGFGPIGIHVAYDSEKFDDGKRHGVLGIGANIELRPSGP*
Ga0134080_100432042	F002331	AGG	MRAVLTLGLAACLATPATAQWLGMPVWNSPKGGTGVTISGDYGKPNDAYGGGNAWGGHASLGVGTLTLAAGVSSLKTDIDPVRVTSWGGNAAFRLIGGSLLPFSLNLQAGAVRTSAVEGQKQTHVIGAVGFSVPLPTPGISIEPYLSPGIRHRDLGPTNGSSTEFGYVFGANLSFGLLGAHVAYDNERKKGGGNVGVFGVGLHVDLHLPLGM*