Scaffold Ga0129297_10169464

Overview

Basic Information

• Taxon OID: 3300010324
• Scaffold ID: Ga0129297_10169464
• Source Dataset Name: Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1011
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Indonesia: Gulf of Boni
• Coordinates
  • Lat. (^o): -2.75
  • Long. (^o): 121.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050736	Metagenome / Metatranscriptome	145	Y
F056130	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129297_101694641	F050736	GAGG	VPAPTISHVILTAALITVVFTVQVFYFYVVDNVWAEMTRRELRELSDYVADTIANLYFLLNATNTNPTLTKTLRLPLDISGSSYILEITYDQGTHDAQTVKSTMKEKSWLSSTAWLPKGLKVDTGKTQIIESSAKTVVAGCQRVSSNIRIWIAYQG*
Ga0129297_101694642	F056130	N/A	ATGVIRYWLSTHYVSFDANYESWILGDNSSVITGSGSSYGRAVIRQEPGMVSISLDYRVRAMRTSVIKIGVEDTNYVDIWVVKLSMLVSKPWSYVHDFDLQARALSIRTASHSYSGVTNQTSVVRVQIGTAQSQVPITLTVPGSVVFNVILAEVRVNV*