Scaffold Ga0102883_1026276

Overview

Basic Information

• Taxon OID: 3300010312
• Scaffold ID: Ga0102883_1026276
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1757
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2322
  • Long. (^o): -123.8817

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039142	Metagenome / Metatranscriptome	164	Y
F051923	Metagenome / Metatranscriptome	143	N
F093292	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102883_10262761	F051923	N/A	MIMSKFEVRKTLAPYGFQVIDNTTDTVLETFKRKYQANAHAFYLGQTTMKTVKNLMTGKEIEIAENTPWHCNPASESYWSM*
Ga0102883_10262762	F039142	GGAG	MKTFTTKQLVDQLFANLRDLAGNTDKNAYIAGYLSACLGDIAEKGVDELTAIVDFTNQQIEVREYNKRAEARRDAFENGEYA*
Ga0102883_10262765	F093292	AGGA	MPRKKIAAAKTESLEVAQETAPTYYEYTTPDGVSVLLDRYEWSRGLGLSDKNVKKAQAARHREVAKGFAIVEEA*