Scaffold Ga0102883_1005981

Overview

Basic Information

• Taxon OID: 3300010312
• Scaffold ID: Ga0102883_1005981
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3861
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2322
  • Long. (^o): -123.8817

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011151	Metagenome / Metatranscriptome	294	Y
F043920	Metagenome / Metatranscriptome	155	N
F085161	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102883_10059811	F011151	GGAG	MTGFQSKRKMAEDRFKVYCEWCHDWHYTDELEFLNIEEDIQGRDVMHFECGQPPSWNEDISRSDGPSSLLYKH*
Ga0102883_10059814	F043920	N/A	MELMRGSIIMLVSFLIVFGAVGGIEVNPDADLFTLMMIAIGGLIGMLIGVSVIREDA*
Ga0102883_10059815	F085161	AGGAG	MEVYIVKSFSPENGWVNLKAFDNNDAAVYFANTVEKQIPDDIEDEFVEIEVLNVRRWN*