Scaffold Ga0116254_1001099

Overview

Basic Information

• Taxon OID: 3300010311
• Scaffold ID: Ga0116254_1001099
• Source Dataset Name: AD_JPTRca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29850
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 34.65
  • Long. (^o): 135.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070167	Metagenome / Metatranscriptome	123	N
F081379	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116254_100109915	F070167	AGAAGG	MSLLGNALFGPKSLGGYNQTPDQLTQAYTPQTYSVDTSRYNALGEEFLNPYSSRNRGMYNDLKKMGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYGLQGSMANAAAQNAAAMQGSQAALNYGLQKMQADATMQAMRAQNKTGFWGGLLANAIGATPATIFGLRQLKE*
Ga0116254_100109920	F081379	AGGAG	MKLTTLGAADALGAPIPVFIPDTYRTRIIQTTAGVVTTLPFDSSEEARPYISIEATGPDYPTDPDQKTDLYLYAMGNVYEANHIQLHINLGQGSDDNCNIIRKEIDLILTINITKSSTNIEYIVDKINKLNAELGKNIITYSYDPRFKDYETSTPVHEYFRRYRPGRCANLVRVLTFDNDVFIGNFPESGDPWNSLITPAASMPLVPGVETYIMLSPNEMLSVSGGGTAGKKVYITPQRNY*