Scaffold Ga0129342_1068607

Overview

Basic Information

• Taxon OID: 3300010299
• Scaffold ID: Ga0129342_1068607
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1363
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.5161
  • Long. (^o): -76.1223

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026260	Metagenome	198	Y
F035748	Metagenome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129342_10686073	F035748	AGGAG	VKLYQPEFAGMTVWAVADPKSSKGTYTATRGTSPPPNASYGHPIGRYDSEGSYWTFCPNVGVEDPNSPQSSRCCKHPGADAERRKAIKQKAWGNLNSMGSYKETEF*
Ga0129342_10686074	F026260	GAG	MKRTFEITSAVKILRDGIAKGYWTLEDLDSPPPGTQMNFADYRRFCVAQGYVGKDPVYKNLLREAEKN