Scaffold Ga0134093_1003933

Overview

Basic Information

• Taxon OID: 3300010277
• Scaffold ID: Ga0134093_1003933
• Source Dataset Name: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 4_13_20_68_A1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9768
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Source Dataset Sampling Location

• Location Name: USA: Dartmouth College, New Hampshire
• Coordinates
  • Lat. (^o): 43.726
  • Long. (^o): -72.1429

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038199	Metagenome	166	Y
F063614	Metagenome / Metatranscriptome	129	Y
F091897	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134093_100393311	F063614	N/A	MNRRLQKMSYVRLKLTIETLVKTGLEKVNVLGVEESQADLWQIYDMCQELMAFWDSELTEERIDELEEIMAELPLLKKV*
Ga0134093_100393316	F038199	GAGG	MIQYTQAEFLQLMQQYNSTDRKVIKANLRRIMDTYGIKPADIINLGYSPRNVYAWTNKSTKNIPLFEQALNIAVHFDFSITEFLK*
Ga0134093_100393321	F091897	N/A	MKGVYNMIGSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKCKLYCNKCADKHWND*